PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000011.1_g00131.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 749aa    MW: 85158.4 Da    PI: 5.1768
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000011.1_g00131.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR182.28.7e-2650149291
                     FAR1   2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkekdgkwe 77 
                              fY+eYA+++GF++ +++s++s    + ge+++++f Cs++g+++ + k+       ++ e+ +  +++t+Cka+++vk+++dg+w 
  Itr_sc000011.1_g00131.1  50 FYQEYARTMGFETATQNSRRSkvsGELGEFIDAKFACSRSGTKRGNGKSakapgssQDPENAEGRSKKTDCKACMHVKRRSDGRWT 135
                              9********************443455689**************99999999*99888899999********************** PP

                     FAR1  78 vtkleleHnHelap 91 
                              ++k+e+eHnHel+p
  Itr_sc000011.1_g00131.1 136 IHKFEKEHNHELSP 149
                              ************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-2250149IPR004330FAR1 DNA binding domain
PfamPF105518.3E-25242330IPR018289MULE transposase domain
PROSITE profilePS5096610.534524561IPR007527Zinc finger, SWIM-type
PfamPF044342.5E-4534558IPR007527Zinc finger, SWIM-type
SMARTSM005751.5E-4536563IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MDKDDKAETN DAVNNEERLD NGDEVGEFQD VNLEPPADIE FESRDEASAF YQEYARTMGF  60
ETATQNSRRS KVSGELGEFI DAKFACSRSG TKRGNGKSAK APGSSQDPEN AEGRSKKTDC  120
KACMHVKRRS DGRWTIHKFE KEHNHELSPP EAVSEQTRRV YAAMTRQLAE FKNVVAIKSD  180
EGGQNLAMDA GEANILLEFF TQMQSMNSNF FYAVEVSEDH RLKNFLWVDA KSRHDYTHFS  240
DVVSFDATYV RNKYKIPMAL FIGVNHHYQF VLLGAALLSD ETSATLSWVM RTWLRAMGGQ  300
APKAIVTDHE QAMTSVISEI FPSSLHFFCL GKVTESVKNA VKHNEEEFMV KFEECIYRTW  360
TDEEFEERWK TLINMFELKE NELFLSLYEE RRKWVPTLMR KNAAFLGGMS SAVRSETESV  420
NSFFDKYVQK NTTLQEFVKQ YEAILQYRYE EEAKADSDTS NEQPVLKTSS PFEKHMAGVY  480
THSVFTKFQI EAVGVVACVL VSQKQDEKGS ITYRIKDCEK DQDFMVIVNE DKPEEVCCTC  540
HLFELKGYVC RHLMVVLQIR GISTIPQQYV MKRWTKDAKN RYPLLAESGE NKSRVQRYND  600
LCQRAMLLSE EGSLSQESYT SALHALDEAY GNCVGALTSS TPGLLVEGDN QTRKTNKKKS  660
NPTKKRKVTS EEQDVMIAGG APDNFAQSDM STSTPMTLDG YCPQLPQGVQ GMLNLMAPNY  720
GNQQTMQEES KVRSSSQLND NEDEDPRQA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016449478.10.0PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X2
RefseqXP_016449479.10.0PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X2
RefseqXP_016449480.10.0PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X2
RefseqXP_016449482.10.0PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like isoform X2
SwissprotQ9LIE50.0FHY3_ARATH; Protein FAR-RED ELONGATED HYPOCOTYL 3
TrEMBLK4CEI70.0K4CEI7_SOLLC; Uncharacterized protein
STRINGSolyc07g043270.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49621103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.20.0far-red elongated hypocotyls 3